Progress made on ASF genome mapping

By Aidan Fortune

- Last updated on GMT

Progress made on ASF genome mapping

Related tags Pork Uk Asia African swine fever Livestock

Scientists from The Pirbright Institute in the UK have worked with University College London (UCL) to map the expression of genes across the entire African Swine Fever (ASF) virus genome.

The mapping will help to establish their order of activation as well as uncovering new genes and could provide vital information for those developing vaccines and antiviral drugs to prevent the disease.

In their study, published in the Journal of Virology, the researchers used next generation sequencing to analyse genes expressed by ASF.

They used this to create the first complete genetic road map, which reveals the order that different sets of ASF genes are turned on throughout its infection cycle.

Genes, including those in ASF, are activated through a process called transcription. This is carried out by a molecular machine called RNA polymerase, which serves as ‘gatekeeper’ by ensuring that the information coded in the DNA is expressed at the correct time during infection. The RNA polymerase finds genes based on specific DNA sequences, or ‘promoters’, that are located before a gene.

The team of researchers, supported by funding from Wellcome, demonstrated that genes expressed during early infection have different promoters to those expressed later, allowing the virus to shift the pattern of activated genes according to the stage of infection. Genes used for DNA replication and immune system evasion are switched on early in the infection cycle, whereas those involved in creating proteins for the new virus particles are activated later.

“ASF has a very large DNA genome. For comparison, the influenza virus expresses eight genes, whereas ASF expresses between 150 and 190, which has so far made it difficult for scientists to identify and determine the significance of each gene. Our study helps to untangle which genes are important during different stages of infection to better understand their functions,” ​said Dr Linda Dixon, head of the African Swine Fever virus group at Pirbright.

“Our data shows ASF has a complex and mammalian-like method for controlling gene expression, that uses specific promoters to enable RNA polymerase to differentiate between which genes it should express when during viral infection. Our study has also uncovered over 30 novel genes that were previously unknown,”​ added Professor of Molecular Biophysics at UCL Finn Werner.

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